This is done by reducing duplication of template arguments, and
formalized $include/$template into the flattenSwagger step.

Added documentation for collections.

This is a naive implementation of resolving JSON schema links,
will want to pull schemas into definitions eventually.

Remove unnecessary analysis input file update

On packfile upload, use acquisition timestamp and subject code to find containers

Properly 404 on missing file

'plus' and 'minus' download filters 

Add rule.disabled support

Fix db upgrade 42 for containers with archived=false

Job improvements

Remove archived flag/add hidden tag

Fix analysis insertion bug when batch processing multiple targets for SDK gears

Add standard info editing for analyses

Fix upgrade_to_41() typo

Fix bug when deleting empty group

Delete functionality - phase 1 (tagging)