Coverage report is generated by running integration tests, and
coverage can be checked by running `grunt coverage`.

Lint errors will now break the build.

Also reduces number of lint false positives.

This is done by reducing duplication of template arguments, and
formalized $include/$template into the flattenSwagger step.

Added documentation for collections.

This is a naive implementation of resolving JSON schema links,
will want to pull schemas into definitions eventually.

Remove unnecessary analysis input file update

On packfile upload, use acquisition timestamp and subject code to find containers

Properly 404 on missing file

'plus' and 'minus' download filters 

Add rule.disabled support

Fix db upgrade 42 for containers with archived=false

Job improvements

Remove archived flag/add hidden tag

Fix analysis insertion bug when batch processing multiple targets for SDK gears