SciTran – Scientific Transparency
Overview
SciTran Core is a RESTful HTTP API, written in Python and backed by MongoDB. It is the central component of the SciTran data management system. Its purpose is to enable scientific transparency through secure data management and reproducible processing.
Documentation
Contributing
Testing
License
Usage
Currently Python 2 Only
OSX
$ ./bin/run-dev-osx.sh --help
Run a development instance of scitran-core
Also starts mongo on port 9001 by default
Usage:
-C, --config-file <shell-script>: Source a shell script to set environemnt variables
-I, --no-install: Do not attempt install the application first
-R, --reload <interval>: Enable live reload, specifying interval in seconds
-T, --no-testdata: do not bootstrap testdata
-U, --no-user: do not bootstrap users and groupsNote: For the best experience, please upgrade bash using
brew install bash bash-completion
sudo dscl . -create /Users/$(whoami) UserShell /usr/local/bin/bashUbuntu
mkvirtualenv scitran-core
./bin/install-ubuntu.sh
uwsgi --http :8080 --master --wsgi-file bin/api.wsgi -H $VIRTUAL_ENV \
--env SCITRAN_PERSISTENT_DB_URI="mongodb://localhost:27017/scitran-core"