SciTran – Scientific Transparency

Overview

SciTran Core is a RESTful HTTP API, written in Python and backed by MongoDB. It is the central component of the SciTran data management system. Its purpose is to enable scientific transparency through secure data management and reproducible processing.

Documentation

API documentation for branches and tags can be found at https://scitran.github.io/core/branches/<branchname> and https://scitran.github.io/core/tags/<tagname>.

Contributing

Testing

License

Usage

Currently Python 2 Only

OSX

$ ./bin/run-dev-osx.sh --help

For the best experience, please upgrade to a recent version of bash.

brew install bash bash-completion
sudo dscl . -create /Users/$(whoami) UserShell /usr/local/bin/bash

Ubuntu

mkvirtualenv scitran-core
./bin/install-ubuntu.sh
uwsgi --http :8080 --master --wsgi-file bin/api.wsgi -H $VIRTUAL_ENV \
    --env SCITRAN_PERSISTENT_DB_URI="mongodb://localhost:27017/scitran-core"